Cran motifmatchr
WebFor each cell, we calculate its closest neighbors in the dataset based on a weighted combination of RNA and protein similarities. The cell-specific modality weights and multimodal neighbors are calculated in a single function, … WebTools for motif analysis in multi-level networks. Multi-level networks combine multiple networks in one, e.g. social-ecological networks. Motifs are small configurations of nodes …
Cran motifmatchr
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Webmotifmatchr is an R package for fast motif matching, using C++ code from the MOODS library. The MOODS library was developed by Pasi Rastas, Janne Korhonen, and Petri … WebJun 9, 2024 · Dear all, This is far from being the first time I run FindMarkers, but first time I encounter this problem. I run FindMarkers for 17 clusters using the default (wilcoxon) test - I run each cluster vs all. First 6 clusters have NAs for p ...
WebCRAN - Package ragg Anti-Grain Geometry (AGG) is a high-quality and high-performance 2D drawing library. The 'ragg' package provides a set of graphic devices based on AGG … WebDescribes spatial patterns of categorical raster data for any defined regular and irregular areas. Patterns are described quantitatively using built-in signatures based on co …
Weblinux-64 v0.26.0; osx-64 v0.26.0; noarch v0.44.0; conda install To install this package run one of the following: conda install -c bioconda bioconductor-biocgenerics conda install -c "bioconda/label/broken" bioconductor-biocgenerics Webmotifmatchr is an R package for fast motif matching, using C++ code from the MOODS library. The MOODS library was developed by Pasi Rastas, Janne Korhonen, and Petri …
WebQuickly find motif matches for many motifs and many sequences. Wraps C++ code from the MOODS motif calling library, which was developed by Pasi Rastas, Janne Korhonen, …
WebIntroduction. motifmatchr is an R package for fast motif matching, using C++ code from the MOODS library. The MOODS library was developed by Pasi Rastas, Janne Korhonen, and Petri Martinmäki. The core C++ library from MOODs version MOODS 1.9.3 code has been included in this repository. maine predictive weather radarWebchromVAR is an R package for the analysis of sparse chromatin accessibility. chromVAR takes as inputs aligned fragments (filtered for duplicates and low quality) from ATAC-seq or DNAse-seq experiments as well as genomic annotations such as motif positions. chromVAR computes for each annotation and each cell or sample a bias corrected ... maine power yogaWebOct 27, 2024 · motifmatchr: Fast Motif Matching in R Quickly find motif matches for many motifs and many sequences. Wraps C++ code from the MOODS motif calling library, … maine prairie high school dixon caWebDescription. The S4Vectors package defines the Vector and List virtual classes and a set of generic functions that extend the semantic of ordinary vectors and lists in R. Package developers can easily implement vector-like or list-like … maine prefab cabin kitsWebmotifmatchr 7 motifmatchr motifmatchr: Fast Motif Matching in R Description The motifmatchr package is designed for analyzing many sequences and many motifs to find which sequences contain which motifs. Details motifmatchr uses the MOODS C++ library (developedby Pasi Rastas, Janne Korhonen, and Petri Martinmaki) internally for motif … maine power supplyWebContains data and functions that define and allow translation between different chromosome sequence naming conventions (e.g., "chr1" versus "1"), including a function that attempts to place sequence names in their natural, rather than lexicographic, order. maine power utilityWebmotifmatchr is an R package for fast motif matching, using C++ code from the MOODS library. The MOODS library was developed by Pasi Rastas, Janne Korhonen, and Petri Martinmäki. The core C++ library from MOODs version MOODS 1.9.3 code has been included in this repository. Note on recent function name changes maine prepper what happened